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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54251154_54252236_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54251154 - 54252236
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCACA
Flanking Amino Acid:
VLELRAGNQQILGVFAKKVI
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.7
80.5
30.3
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
67.8
0.55
2
84.69
35.1

Associated Gene:

Gene:
PLAGL1
Ensembl Gene ID:
ENSAPLG00000007371
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007641
54237130 - 54262397
25268