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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54252350_54253907_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54252350 - 54253907
Intron Length:
1558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCCACCTTAATT
Flanking Amino Acid:
RYDESRLVLQVLKDGGKYFL
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.7
0.56
0.9
70.7
38.3
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
74.1
0.83
1.3
80.31
42.1

Associated Gene:

Gene:
PLAGL1
Ensembl Gene ID:
ENSAPLG00000007371
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007641
54237130 - 54262397
25268