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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54254058_54258070_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54254058 - 54258070
Intron Length:
4013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TTTCCATTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATTCACA
Flanking Amino Acid:
CGEVYFTTVKPIEPHTELKV
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82
0.72
0.8
76.4
31
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
60.1
0.31
2
78.35
37.8

Associated Gene:

Gene:
PLAGL1
Ensembl Gene ID:
ENSAPLG00000007371
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007641
54237130 - 54262397
25268