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Intron Name: Anas_platyrhynchos_platyrhynchos_3_54258191_54260256_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54258191 - 54260256

Intron Length:

2066

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

GTTCTCATTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

CTGTTCTCATTG

Flanking Amino Acid:

TDVCPLPPVAKEPVDPWICS

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

72.9

36.6

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

80.5

0.69

0.9

74.2

35.2

Minor 5ss

39.2

-1.2

2.7

37.4

Minor BPS

46.5

-0.4

1.8

50.42

44.6

Associated Gene:

Gene:

PLAGL1

Ensembl Gene ID:

ENSAPLG00000007371

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007641

54237130 - 54262397

25268