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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54260754_54261127_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54260754 - 54261127
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTC
5'SS Class:
major
3'SS Sequence:
GTGTGTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
ATGCTGATAACA
Flanking Amino Acid:
KAFISKYKLLRHSATHSPQK
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61.3
43.5
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
64.7
0.33
1
61.7
44.5
Minor 5ss
33.6
-1.9
3.7
50.1
46.4
Minor BPS
45.4
-0.3
2.2
59.74
40

Associated Gene:

Gene:
PLAGL1
Ensembl Gene ID:
ENSAPLG00000007371
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007641
54237130 - 54262397
25268