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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54260869_54269905_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54260869 - 54269905
Intron Length:
9037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCACCAATT
Flanking Amino Acid:
SPGKKSSGEFRNMKTGTLGL
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.6
0.62
0.8
73.3
30.4
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
53.6
0.19
2.1
82.67
38.2

Associated Gene:

Gene:
ZC2HC1B
Ensembl Gene ID:
ENSAPLG00000007379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043362
54260694 - 54274580
13887