Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54271703_54273493_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54271703 - 54273493

Intron Length:

1791

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTGGT

5'SS Class:

major

3'SS Sequence:

TTCTTATGATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTCTTATGATC

Flanking Amino Acid:

PPPPPPSINPDYVQCPYCSR

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.2

40.5

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

0.54

74.5

39.1

Minor 5ss

36.9

-1.5

3.1

50.4

45.9

Minor BPS

51.4

0.02

1.5

67.17

32.1

Associated Gene:

Gene:

ZC2HC1B

Ensembl Gene ID:

ENSAPLG00000007379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007646

54241208 - 54274580

33373

ENSAPLT00000043362

54260694 - 54274580

13887

ENSAPLT00000032542

54267731 - 54277297

9567