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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54273633_54274418_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54273633 - 54274418
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTCCTTTATT
Flanking Amino Acid:
GTVKRQPPQKNQQVKKSNWR
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.5
33.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86.8
0.83
0.7
80.7
30.6
Minor 5ss
46.4
-0.4
3.1
63.9
47.7
Minor BPS
75.4
0.88
1.5
87.87
37.8

Associated Gene:

Gene:
ZC2HC1B
Ensembl Gene ID:
ENSAPLG00000007379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032542
54267731 - 54277297
9567
ENSAPLT00000007646
54241208 - 54274580
33373
ENSAPLT00000043362
54260694 - 54274580
13887