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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54274539_54276315_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54274539 - 54276315
Intron Length:
1777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAACAA
5'SS Class:
major
3'SS Sequence:
CTTTGCATCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTCTTTGCATC
Flanking Amino Acid:
CGRHFAQDVLTRHEPICKKV
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
62.9
37
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.2
0.57
0.9
66.2
39.5
Minor 5ss
30.8
-2.2
3.1
35.6
42.2
Minor BPS
47.4
-0.2
1.8
63.75
36.2

Associated Gene:

Gene:
ZC2HC1B
Ensembl Gene ID:
ENSAPLG00000007379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032542
54267731 - 54277297
9567