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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54300090_54302339_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54300090 - 54302339
Intron Length:
2250

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTGTTTAACA
Flanking Amino Acid:
PWARLTPADKAAIRKELNEF
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.06
0.8
83
28.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78
0.63
1
73.6
40.4
Minor 5ss
19.2
-3.5
4
32
42.8
Minor BPS
71.2
0.66
1.7
80.29
35.7

Associated Gene:

Gene:
PHACTR2
Ensembl Gene ID:
ENSAPLG00000007779
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035843
54298922 - 54370243
71322
ENSAPLT00000031798
54298922 - 54370243
71322
ENSAPLT00000038921
54298922 - 54370243
71322
ENSAPLT00000008090
54298922 - 54400318
101397
ENSAPLT00000036709
54298922 - 54407766
108845
ENSAPLT00000036586
54298922 - 54355972
57051