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Intron Name: Anas_platyrhynchos_platyrhynchos_3_54303652_54309496_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54303652 - 54309496

Intron Length:

5845

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

CTTCCAAAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCTTCCAAAAAC

Flanking Amino Acid:

EELEQRNILKQKNEEEEQEA

Intron Amino Acid Position:

541

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.56

1.3

81.8

38.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

61.8

0.27

56.2

36.8

Minor 5ss

42.6

-0.8

2.9

41.5

Minor BPS

51.1

0.01

2.1

68.53

42.7

Associated Gene:

Gene:

PHACTR2

Ensembl Gene ID:

ENSAPLG00000007779

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036586

54298922 - 54355972

57051

ENSAPLT00000035843

54298922 - 54370243

71322

ENSAPLT00000031798

54298922 - 54370243

71322

ENSAPLT00000038921

54298922 - 54370243

71322

ENSAPLT00000008090

54298922 - 54400318

101397

ENSAPLT00000036709

54298922 - 54407766

108845