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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54309553_54312060_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54309553 - 54312060
Intron Length:
2508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAGTT
5'SS Class:
major
3'SS Sequence:
TTTGTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTGTTCTTACAG
Flanking Amino Acid:
IRHQIGTKLVRRLSQRPTTE
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
73.5
35.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
89.6
0.89
0.7
84.2
30.9
Minor 5ss
42.5
-0.8
3.5
64.9
46.4
Minor BPS
56.4
0.06
1.8
63.83
44.2

Associated Gene:

Gene:
PHACTR2
Ensembl Gene ID:
ENSAPLG00000007779
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008090
54298922 - 54400318
101397
ENSAPLT00000036709
54298922 - 54407766
108845
ENSAPLT00000036586
54298922 - 54355972
57051
ENSAPLT00000035843
54298922 - 54370243
71322
ENSAPLT00000031798
54298922 - 54370243
71322
ENSAPLT00000038921
54298922 - 54370243
71322