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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54312218_54313955_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54312218 - 54313955
Intron Length:
1738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCCC
5'SS Class:
major
3'SS Sequence:
TTCCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
ATGAACTAAATT
Flanking Amino Acid:
DDDDDNASAESSLASKIRRR
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
63.5
41.4
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
84.9
0.78
0.7
84.1
23.9
Minor 5ss
40.8
-1
3
52.8
38
Minor BPS
49.5
0.04
1.9
68.02
42.9

Associated Gene:

Gene:
PHACTR2
Ensembl Gene ID:
ENSAPLG00000007779
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036586
54298922 - 54355972
57051
ENSAPLT00000035843
54298922 - 54370243
71322
ENSAPLT00000031798
54298922 - 54370243
71322
ENSAPLT00000038921
54298922 - 54370243
71322
ENSAPLT00000008090
54298922 - 54400318
101397
ENSAPLT00000036709
54298922 - 54407766
108845