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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54314156_54315452_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54314156 - 54315452
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TATGAATTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGCTTATGAATT
Flanking Amino Acid:
GPDASGEDSKSLATKDDQEA
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
75.5
0.63
1
66
40.9
Major PPT
65.6
0.35
1
58.4
41.6
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
52.3
0.15
1.7
70.38
40.6

Associated Gene:

Gene:
PHACTR2
Ensembl Gene ID:
ENSAPLG00000007779
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036586
54298922 - 54355972
57051
ENSAPLT00000035843
54298922 - 54370243
71322
ENSAPLT00000031798
54298922 - 54370243
71322
ENSAPLT00000038921
54298922 - 54370243
71322
ENSAPLT00000008090
54298922 - 54400318
101397
ENSAPLT00000036709
54298922 - 54407766
108845