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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54330015_54332656_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54330015 - 54332656
Intron Length:
2642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAACA
5'SS Class:
major
3'SS Sequence:
ATTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GGCTTTTTAATT
Flanking Amino Acid:
RGVLKEMPEQDGDVTVNFET
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
31.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.4
0.8
0.8
82.7
32.9
Minor 5ss
28.4
-2.5
2.7
32.9
41.5
Minor BPS
66.2
0.59
1.2
72.44
39.2

Associated Gene:

Gene:
PHACTR2
Ensembl Gene ID:
ENSAPLG00000007779
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038921
54298922 - 54370243
71322
ENSAPLT00000036709
54298922 - 54407766
108845
ENSAPLT00000035843
54298922 - 54370243
71322
ENSAPLT00000008090
54298922 - 54400318
101397
ENSAPLT00000045219
54325154 - 54370243
45090