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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54332738_54343860_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54332738 - 54343860
Intron Length:
11123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCACG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTATTCTTAACT
Flanking Amino Acid:
TSDKFRETSAVLERKISTRQ
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68
42.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
81.6
0.71
0.8
77.3
31.5
Minor 5ss
45.8
-0.4
2.5
58.1
46.3
Minor BPS
81.4
1.06
1.1
88.33
36.7

Associated Gene:

Gene:
PHACTR2
Ensembl Gene ID:
ENSAPLG00000007779
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036709
54298922 - 54407766
108845
ENSAPLT00000035843
54298922 - 54370243
71322
ENSAPLT00000008090
54298922 - 54400318
101397
ENSAPLT00000045219
54325154 - 54370243
45090
ENSAPLT00000038921
54298922 - 54370243
71322