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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54430929_54433222_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54430929 - 54433222
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTCC
5'SS Class:
major
3'SS Sequence:
CTGTATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTATCTGTATTT
Flanking Amino Acid:
SVPSFGSEWFWWYWQKEKRE
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.6
36.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
78
0.63
0.9
73.2
36.9
Minor 5ss
39.8
-1.1
2.9
48.2
42.1
Minor BPS
47.8
-0
2.2
69.05
42.4

Associated Gene:

Gene:
FUCA2
Ensembl Gene ID:
ENSAPLG00000008382
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008718
54430591 - 54440681
10091