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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54435120_54440660_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54435120 - 54440660
Intron Length:
5541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCTC
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TAATGATTTACT
Flanking Amino Acid:
TNKPYYLRLQDVGGIFTEER
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68
43.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
74.6
0.55
1
75.3
33.5
Minor 5ss
34.2
-1.8
3.6
50.1
46.4
Minor BPS
47.7
-0.1
2.3
71.36
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008521
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008876
54433882 - 54461782
27901