About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54435279_54435925_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54435279 - 54435925
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTATCAT
5'SS Class:
major
3'SS Sequence:
TCCTTGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
AAATCATAAACT
Flanking Amino Acid:
TGFLAWLYNDSPVRDTVVTN
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
69
37
Major BPS
71.6
0.54
1
72
33.1
Major PPT
83
0.74
0.8
80.2
31.8
Minor 5ss
35.9
-1.6
3
49
47.2
Minor BPS
56
0.27
1.9
74.2
41.8

Associated Gene:

Gene:
FUCA2
Ensembl Gene ID:
ENSAPLG00000008382
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008718
54430591 - 54440681
10091