Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54436137_54438047_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

54436137 - 54438047

Intron Length:

1911

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGCGG

5'SS Class:

major

3'SS Sequence:

AAAAACATTTCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

ATGTGTTTAAAA

Flanking Amino Acid:

DYFTIEELVKQLVETVSCGG

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

47.3

Major BPS

73.1

0.58

79.6

29.1

Major PPT

59.6

0.22

1.1

52.8

45.5

Minor 5ss

36.2

-1.6

3.2

47.2

48.2

Minor BPS

55.6

0.17

1.9

66.61

Associated Gene:

Gene:

FUCA2

Ensembl Gene ID:

ENSAPLG00000008382

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008718

54430591 - 54440681

10091