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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54443098_54444280_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54443098 - 54444280
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TGATCTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTTTTGATC
Flanking Amino Acid:
QDLSQNGSVNSLSSVSLPLA
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.7
0.56
0.9
66.5
40.4
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
68.8
0.58
1.1
73.3
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008521
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035146
54440296 - 54461782
21487
ENSAPLT00000023413
54441763 - 54461782
20020
ENSAPLT00000008876
54433882 - 54461782
27901