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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54445201_54446117_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54445201 - 54446117
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTACT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTAAAT
Flanking Amino Acid:
PDEENPLATQACGLTERDTA
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
77.5
37.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
91.2
0.93
0.7
84.6
36
Minor 5ss
37.4
-1.4
3
52.9
43.6
Minor BPS
54.8
0.23
2.1
79.58
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008521
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035146
54440296 - 54461782
21487
ENSAPLT00000023413
54441763 - 54461782
20020
ENSAPLT00000008876
54433882 - 54461782
27901