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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54446275_54446532_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54446275 - 54446532
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
GCAAAATTAACA
Flanking Amino Acid:
VKQAVHKVFGSISLKHALSL
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
48.1
-0.1
1.8
56.59
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008521
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023413
54441763 - 54461782
20020
ENSAPLT00000008876
54433882 - 54461782
27901
ENSAPLT00000035146
54440296 - 54461782
21487