About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54448581_54449984_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54448581 - 54449984
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTGACTT
Flanking Amino Acid:
LEIWEDLKIISFTRSIVAVY
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
72.9
0.52
1
71
38.8
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
47.8
-0
1.8
71.16
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008521
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035146
54440296 - 54461782
21487
ENSAPLT00000023413
54441763 - 54461782
20020
ENSAPLT00000008876
54433882 - 54461782
27901