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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54450029_54454304_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54450029 - 54454304
Intron Length:
4276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTGCATTTATT
Flanking Amino Acid:
SESLTSLLKNRPANKLEIWE
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
82.7
0.74
0.8
77.4
30.8
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
56.7
0.29
2
81.12
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008521
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035146
54440296 - 54461782
21487
ENSAPLT00000023413
54441763 - 54461782
20020
ENSAPLT00000008876
54433882 - 54461782
27901