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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54469384_54469930_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
54469384 - 54469930
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AT
5'SS Sequence:
TGA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AACTCATTCACAT|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AATACCTTAACT
Flanking Amino Acid:
IMCAAAVRLMKIPRVVYGCQ
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
56
43.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
39.8
-0.5
3.1
53.9
39.7
Minor 5ss
94.2
1.49
0.8
86.6
30.5
Minor BPS
81.7
1.07
1.1
89.09
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023504
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026850
54461944 - 54496662
34719