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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54471634_54495426_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54471634 - 54495426
Intron Length:
23793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTCATTT
Flanking Amino Acid:
KAFYRQENPNASPELPLECS
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.2
Major BPS
100
1.24
0.5
100
0
Major PPT
70.8
0.47
0.9
65
35.4
Minor 5ss
43.5
-0.7
3.1
57.4
41.8
Minor BPS
51.2
0.12
1.7
72.22
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023504
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026850
54461944 - 54496662
34719