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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54503203_54506382_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54503203 - 54506382
Intron Length:
3180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CATATGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTCCATATGT
Flanking Amino Acid:
LNNYIWDTQKCIEEEKEKTK
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.1
0.61
1
73
41.7
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
50.6
0.1
2.2
76.59
45.8

Associated Gene:

Gene:
AIG1
Ensembl Gene ID:
ENSAPLG00000009304
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009683
54503165 - 54623874
120710