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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54506547_54515969_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54506547 - 54515969
Intron Length:
9423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAG
U12 Branch Point Sequence:
GAGTCAGTACTT
Flanking Amino Acid:
VCTFAVGYILWVCWIHHVTG
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
49.2
-0
1.6
59
44.6
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
41.9
-0.5
2.3
58.79
44.4

Associated Gene:

Gene:
AIG1
Ensembl Gene ID:
ENSAPLG00000009304
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009683
54503165 - 54623874
120710