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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54516086_54579217_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54516086 - 54579217
Intron Length:
63132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
FIPAWLNHGMHTTVLPFILI
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
AIG1
Ensembl Gene ID:
ENSAPLG00000009304
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009683
54503165 - 54623874
120710