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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54565_54990_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54565 - 54990
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
TACACCATAATC
Flanking Amino Acid:
DMTVVDNEGKGVLFYSILPT
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
57.3
0.21
1.7
65.47
40

Associated Gene:

Gene:
ANKEF1
Ensembl Gene ID:
ENSAPLG00000008532
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008873
54173 - 66973
12801