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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54641157_54641862_R

Intron Information:

Intron Rank:
155301
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
54641157 - 54641862
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTACGGGG
5'SS Class:
weak_major
3'SS Sequence:
TTCTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.3
44.5
43.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
32.2
-2
3.4
39.1
40.7
Minor BPS
64.2
0.43
1.6
73.03
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031034
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043893
54641125 - 54642919
1795