Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54746436_54747749_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

54746436 - 54747749

Intron Length:

1314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTCCTTACAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

87.2

27.3

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

93.4

0.98

0.6

88.4

21.4

Minor 5ss

38.7

-1.3

3.4

58.4

46.2

Minor BPS

68.9

0.46

1.8

76.73

40.6

Associated Gene:

Gene:

HIVEP2

Ensembl Gene ID:

ENSAPLG00000015149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015799

54746391 - 54773179

26789