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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54753376_54754147_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54753376 - 54754147
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
CATTCCTTGACT
Flanking Amino Acid:
SSSAWKQFAQMKHEPFFLFG
Intron Amino Acid Position:
1806

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.3
34.3
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
85.8
0.81
0.8
80
32.2
Minor 5ss
34.4
-1.8
2.8
41.5
45.1
Minor BPS
82.2
1.1
1.1
88.28
36.8

Associated Gene:

Gene:
HIVEP2
Ensembl Gene ID:
ENSAPLG00000015149
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015799
54746391 - 54773179
26789