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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54754303_54759344_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54754303 - 54759344
Intron Length:
5042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CATGATTTAAAT
Flanking Amino Acid:
EPIRIKIFEGGYKSNEDYVY
Intron Amino Acid Position:
1857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.7
0.62
0.8
73.7
29.9
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
50.8
0.1
1.7
67.09
43.5

Associated Gene:

Gene:
HIVEP2
Ensembl Gene ID:
ENSAPLG00000015149
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015799
54746391 - 54773179
26789