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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54759521_54762121_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54759521 - 54762121
Intron Length:
2601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGAC
5'SS Class:
major
3'SS Sequence:
CTCTGATCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TGTCAGTTAATT
Flanking Amino Acid:
KLCNFAFKTKGNLTKHMKSK
Intron Amino Acid Position:
1916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.8
36.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
67.5
0.39
0.8
61.3
34.1
Minor 5ss
32
-2.1
3.3
43.6
44.1
Minor BPS
51.4
0.12
2.2
75.41
41.1

Associated Gene:

Gene:
HIVEP2
Ensembl Gene ID:
ENSAPLG00000015149
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015799
54746391 - 54773179
26789