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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54763721_54772360_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54763721 - 54772360
Intron Length:
8640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTGGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
TTTCTGGTTACA
Flanking Amino Acid:
QSESIPVGHSRRGLSQGPYF
Intron Amino Acid Position:
2254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
82.1
0.72
0.9
75.8
38.2
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
41.7
-0.6
2.7
64.02
42.2

Associated Gene:

Gene:
HIVEP2
Ensembl Gene ID:
ENSAPLG00000015149
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015799
54746391 - 54773179
26789