About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54863609_54865984_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
54863609 - 54865984
Intron Length:
2376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TTCCTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GAAGCCCTAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
79.1
0.66
0.7
72.8
32
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
57
0.3
1.8
72.13
43.8

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037870
54863526 - 54972699
109174