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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54863609_54867923_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54863609 - 54867923
Intron Length:
4315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GAAGCCCTAACT
Flanking Amino Acid:
NTYCKRSSHTENIFIDKPSS
Intron Amino Acid Position:
1153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
79.1
0.66
0.7
72.8
32
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
57
0.3
1.8
72.13
43.8

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015960
54863430 - 54972699
109270