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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54874707_54875777_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54874707 - 54875777
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
KDASGQLGDNFCWIKNEVVF
Intron Amino Acid Position:
973

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
75.3
33.8
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
91.8
0.94
0.7
93.4
22.6
Minor 5ss
35.5
-1.6
2.9
49.8
40.3
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033522
54858885 - 54972699
113815
ENSAPLT00000019651
54858885 - 54972699
113815
ENSAPLT00000015960
54863430 - 54972699
109270
ENSAPLT00000037870
54863526 - 54972699
109174