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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54877683_54879029_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54877683 - 54879029
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATCATAAACA
Flanking Amino Acid:
AATLLTYIAFEKLRRDYPSK
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.6
0.6
0.8
71.4
34.3
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
57.9
0.24
1.9
71.06
40.4

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033522
54858885 - 54972699
113815
ENSAPLT00000019651
54858885 - 54972699
113815
ENSAPLT00000015960
54863430 - 54972699
109270
ENSAPLT00000037870
54863526 - 54972699
109174