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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54879158_54881642_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54879158 - 54881642
Intron Length:
2485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TTTGCTGTAACT
Flanking Amino Acid:
NHLTHFGVLMDLQRTTTETD
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
65
0.37
1.3
75
40
Major PPT
66.5
0.37
0.9
61.7
34
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
64.3
0.53
2.1
87.23
39

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019651
54858885 - 54972699
113815
ENSAPLT00000015960
54863430 - 54972699
109270
ENSAPLT00000037870
54863526 - 54972699
109174
ENSAPLT00000033522
54858885 - 54972699
113815