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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54881750_54882672_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54881750 - 54882672
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGAAA
U12 Branch Point Sequence:
TTTGTTGGAAAG
Flanking Amino Acid:
TCVFWDMNKNGGNGGWNPTG
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
50.3
0.01
1.5
61.7
43.1
Major PPT
79.6
0.67
0.7
76
26.2
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
41.9
-0.7
2.2
52.37
42.7

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019651
54858885 - 54972699
113815
ENSAPLT00000015960
54863430 - 54972699
109270
ENSAPLT00000037870
54863526 - 54972699
109174
ENSAPLT00000033522
54858885 - 54972699
113815