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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54882719_54888213_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54882719 - 54888213
Intron Length:
5495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
CATGTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
AAAGGTTTACTT
Flanking Amino Acid:
TFFNKNGLFQEDPKPTCVFW
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
68.4
0.41
0.9
65.4
40.7
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
43.4
-0.4
2
55.52
41.3

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037870
54863526 - 54972699
109174
ENSAPLT00000033522
54858885 - 54972699
113815
ENSAPLT00000019651
54858885 - 54972699
113815
ENSAPLT00000015960
54863430 - 54972699
109270