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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54895805_54896514_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54895805 - 54896514
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTAATTAACC
Flanking Amino Acid:
KLQTVEVDPVEKCLAEENPP
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
64.9
0.45
1.8
76.9
38.7

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033522
54858885 - 54972699
113815
ENSAPLT00000019651
54858885 - 54972699
113815
ENSAPLT00000015960
54863430 - 54972699
109270
ENSAPLT00000037870
54863526 - 54972699
109174