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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54896658_54905623_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54896658 - 54905623
Intron Length:
8966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATCT
5'SS Class:
major
3'SS Sequence:
ATTTTCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTGACTCAAAC
Flanking Amino Acid:
VREKRSIGNKSFEVLALLVY
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
84.5
0.78
0.7
78.6
29.5
Minor 5ss
46.1
-0.4
2.9
66.5
44.4
Minor BPS
48
-0.1
1.9
60.94
43.9

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019651
54858885 - 54972699
113815
ENSAPLT00000015960
54863430 - 54972699
109270
ENSAPLT00000037870
54863526 - 54972699
109174
ENSAPLT00000033522
54858885 - 54972699
113815