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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54905818_54907117_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54905818 - 54907117
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
ACTCCTGTGATC
Flanking Amino Acid:
SKVHDMVATWLNQTFQNWNY
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.2
30.6
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
39.1
-1.2
2.8
40.8
45.4
Minor BPS
46.7
-0.2
2
56.48
36.7

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019651
54858885 - 54972699
113815
ENSAPLT00000015960
54863430 - 54972699
109270
ENSAPLT00000037870
54863526 - 54972699
109174
ENSAPLT00000033522
54858885 - 54972699
113815