About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54928270_54966949_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54928270 - 54966949
Intron Length:
38680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTACATTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTTCCTGACCT
Flanking Amino Acid:
TVYIICMQQTAHGCYNCRTV
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.1
0.52
1
66.3
44.1
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
67.2
0.62
1.8
84.75
41.8

Associated Gene:

Gene:
ADGRG6
Ensembl Gene ID:
ENSAPLG00000015270
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033522
54858885 - 54972699
113815
ENSAPLT00000019651
54858885 - 54972699
113815
ENSAPLT00000015960
54863430 - 54972699
109270
ENSAPLT00000037870
54863526 - 54972699
109174