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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55010094_55016070_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55010094 - 55016070
Intron Length:
5977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTTTTGTAACT
Flanking Amino Acid:
DPALYSAQSAGEVHLTPEDF
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
80
0.75
1
78.6
31
Major PPT
86.2
0.81
0.8
81
36.1
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
62.1
0.46
2
82.56
39.6

Associated Gene:

Gene:
VTA1
Ensembl Gene ID:
ENSAPLG00000002391
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002422
55009948 - 55048108
38161