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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_55016152_55017279_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55016152 - 55017279
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCAC
5'SS Class:
major
3'SS Sequence:
CATTGATTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTGATT
Flanking Amino Acid:
NTPAEVPHNTGVTSNTIQPA
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
67.4
37.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
72.5
0.51
0.9
65.7
39.7
Minor 5ss
40
-1.1
2.9
52.4
44.8
Minor BPS
64.7
0.54
1.7
84.15
36.9

Associated Gene:

Gene:
VTA1
Ensembl Gene ID:
ENSAPLG00000002391
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002422
55009948 - 55048108
38161